Software for neurons
The computer programs below are listed according to the articles in which they appear. They run with the XPPAUT computer software. XPPAUT is free, and runs on Unix, Linux, and Windows machines. It can be downloaded from the website of Bard Ermentrout .

• Bertram, Butte, Kiemel, and Sherman
  "Topological and Phenomenological Classification of Bursting Oscillations", Bulletin of Mathematical Biology, vol. 57, pp. 413-439, 1995. BMB_95.ode


• Li, Bertram, and Rinzel
  "Modeling N-Methyl-D-Aspartate-Induced Bursting in Dopamine Neurons", Neuroscience, vol. 71, pp. 397-410, 1996. Neurosci_96.ode


• Bertram, Rhoads, and Cimbora
  "A Phantom Bursting Mechanism for Episodic Bursting", Bulletin of Mathematical Biology, vol. 70, pp. 1979-1993, 2008. BMB_08b


• Tomaiuolo, Tabak, and Bertram
  "Correlation Analysis: A Tool for Comparing Relaxation-Type Models to Experimental Data", In Michael L. Johnson and Ludwig Brand, editors: Methods in Enzymology, vol. 467, Burlington: Academic Press, 2009, pp. 1-22. correlator_09


• Tabak, Mascagni, and Bertram
  "Mechanism for the Universal Pattern of Activity in Developing Neuronal Networks", Journal of Physiology, vol. 103, pp. 2208-2221, 2010. JNP_10


• Tabak, Rinzel, and Bertram
  "Quantifying the Relative Contributions of Divisive and Subtractive Feedback to Rhythm Generation", PLoS Computational Biology, vol. 7(4), e1001124. doi:10.1371/journal.pcbi.1001124, 2011. PLoS_11.ode