Computer Codes for the Journal of Neurophysiology publication

The computer programs below are for Journal of Neurophysiology, vol. 103, pp. 2208-2221, 2010. They describe the electrical activity of an excitatory neuronal network, as well as a mean field model. The programs run with the XPPAUT computer software. XPPAUT is free, and runs on Unix, Linux, and Windows machines. It can be downloaded from the website of Bard Ermentrout .

• A network of 100 integrate-and-fire neurons with synaptic depression and all-to-all coupling. Used to make Figures 2 and 3.
  IF_syndep_100.ode


• A network of 100 Hodgkin-Huxley neurons with synaptic depression and all-to-all coupling. Used to make Figures 3, 4 and 6.
  HH_syndep_100.ode


• A network of 100 integrate-and-fire neurons with cellular adaptation and all-to-all coupling. Used to make Figures 3 and 5.
  IF_celladapt_100.ode


• A network of 100 integrate-and-fire neurons with synaptic depression and sparse coupling (10%). Used to make Figure 3.
  IF_syndep_sparse.ode


• Mean field model with synaptic depression. Used to make Figures 7 and 8.
  s_model.ode