Fellow & PMMB Tenure | Institution | Mentor | Research Area | E-Mail |
* Alexandrov, Alexander
(Graduate)
03/01/97-05/31/01 |
University of California, Berkeley |
Prof. Nicholas R. Cozzarelli |
Mechanism of DNA Unwinding by the Hexameric Helicases |
 |
* Anderson, Eric
(Graduate)
06/15/98-08/15/98 |
U. of Washington |
Prof. Elizabeth Thompson |
Information in Genetic Data for Mixed Fishery Analysis |
|
** Arsuaga, Javier
(Graduate)
01/06/97-08/31/00 |
Florida State University |
Prof. De Witt Sumners |
DNA Packaging in Bacteriophages |
|
* Bath, Jonathan
(Postdoctoral)
10/01/97-09/30/99 |
Harvard University |
Prof. James Wang |
SpoIIIE is a DNA Tracking Protein |
|
** Bowie, David
(Graduate)
1991-1993 |
U.C.L.A |
Prof. David Eisenberg |
Structural Biology |
|
Current Position: Associate Professor, MBI, University of California, Los Angeles |
* Brown, Michael P.S.
(Graduate)
01/01/99-06/30/99 |
University of California
Santa Cruz |
Prof. Sylvia J. Spengler
Prof. David Haussler |
Ribosomal RNA Secondary Structure Analysis Using Stochastic Context Free Grammars |
|
* Browning, Sharon Guy
(Graduate)
9/16/97-6/15/98 |
U. of Washington |
Prof. Elizabeth Thompson |
Analysis of Infinitely Dense Genetic Data |
|
Current Position: Principal Scientist, Population Genetics Group, GlaxoSmithKline |
** Caron, Paul
(Postdoctoral)
1991-1993 |
Harvard University |
Prof. James Wang |
|
|
Current Position: Senior Scientist/Group Leader, Vertex Pharmaceuticals |
* Cawley, Simon
(Graduate)
08/01/98-12/31/01 |
University of California
Berkeley |
Prof. Terry Speed |
Model-Based Basecalling
Transposon-Mediated Sequencing |
|
Bioinformatics Engineer, Affymetrix |
* Chapman, Nicola
(Graduate)
09/16/98-12/15/00
(Postdoctoral)
12/16/00-12/15/01 |
U. of Washington |
Prof. Elizabeth Thompson |
Genome Descent in Isolated Populations |
|
** Churchill, Gary
(Postdoctoral)
1988-1990 |
U. of S. California |
Prof. Michael S. Waterman |
Statistical Genetics |
|
Current Position: Staff Scientist at The Jackson Laboratory |
* Coventry, Alex
(Graduate)
09/01/00-01/15/01 |
M.I.T. |
Prof. Bonnie Berger |
Mouse Genome Gene Recognition Program |
|
** Darcy, Isabel
(Graduate Student)
10/01/95-09/30/97 |
Florida State University |
Prof. De Witt Sumners |
Computation of Strand Passage Metric and Application to Topoisomerase Experiments |
|
Current Position: Assistant Professor, University of Texas at Dallas |
** Deng, James
(Graduate)
1990-1991 |
University of California
Berkeley |
Prof. Vaughan E.R. Jones |
|
|
** Diao, Yuanan
(Postdoctoral)
1989-1993 |
Florida State University |
Prof. De Witt Sumners |
Random Knotting in Polymers |
|
Current Position: Associate Professor, Undergraduate Program Coordinator, Department of Mathematics, University of North Carolina, Charlotte |
* Dong, Arthur
(Graduate)
09/01/00-12/31/01 |
M.I.T. |
Prof. Bonnie Berger |
Mathematical and Computational Techniques for Recognizing Structural Homologues of the Photosynthetic Reaction Center Motif |
|
** Drak, Jacqueline
(Graduate)
1990-1991 |
Harvard University |
Prof. James C. Wang |
|
|
* Dudoit, Sandrine
(Graduate)
03/01/97-06/01/98 |
University of California, Berkeley |
Prof. Terry Speed |
The Genetic Mapping of Complex Human Diseases: Some Statistical Issues |
|
* Eng, Tony
(Graduate)
09/97-07/98 |
M.I.T. |
Prof. Bonnie A. Berger |
De Novo Peptide Sequencing from Matrix-Assisted Laser Post-Source-Decay Spectra |
|
** Ernst, Claus
(Postdoctoral)
1989-1993 |
Florida State University |
Prof. De Witt Sumners |
Tangle Analysis of Recombination |
|
* Fain, Boris
(Graduate)
04/97-10/97 |
Stanford University |
Prof. James White |
Elastic Models of DNA |
|
Currently at Stanford University Dept. of Structural Biology working with Prof. Michael Levitt |
** Fischer, Daniel
(Postdoctoral)
1994-1996 |
U.C.L.A. |
Prof. David S. Eisenberg |
Protein Structure Prediction |
|
Current Position: Profesor, Academia, Bioinformatics, Dept. of Computer Science, Ben Gurion University, Israel |
* Fridlyand, Jane
(Graduate)
08/01/99-12/31/01 |
University of California, Berkeley |
Prof. Terry Speed |
Identifying Quantitative Trait Loci Using Regression Trees |
|
* Fridman, Tema
06/01/99-05/31/01 |
Rutgers University |
Prof. Wilma Olson |
Simulating DNA Conformational Change |
|
* Ge, Yongchao
(Graduate)
08/01/00-12/31/01 |
University of California, Berkeley |
Prof. Terry Speed |
Analysis of Time Course Microarray Date * |
|
** Gerstein, Mark
(Postdoctoral)
1995-1996 |
Stanford University |
Prof. Michael Levitt |
Bioinformatics |
|
Current Position: Assistant Professor, Molecular Biophysics & Biochemistry, Yale University |
Guy, Sharon
9/16/97-6/15/98 |
University of Washington |
Prof. Elizabeth Thompson |
(see Sharon Guy Browning) |
|
** Heath, Simon
(Postdoctoral)
1995-1996 |
U. of Washington |
Prof. Elizabeth Thompson |
Mathematical Genetics |
|
Current Position: Head of Statistical Genetics, Centre National de Genotypage, Evry, France |
** Hines, Jennifer
(Graduate)
1992-1993 |
University of California, Berkeley |
Prof. Ignacio Tinoco, Jr. |
|
|
** Hirchberg, Miriam
(Graduate)
1989-1993 |
Stanford University |
Prof. Michael Levitt |
Structure-function of proteins involved in cell cycle and signal transduction in both human and bacteria |
|
Current Position: Research Associate, Department of Biochemistry, University of Cambridge |
* Hu, Kai
(Graduate)
03/01/97-12/31/97 |
University of California, Los Angeles |
Prof. James H. White |
The elasticity theory of intrinsically curved DNA |
|
** Huang, Enoch
(Graduate)
1994-1995 |
Stanford University |
Prof. Michael Levitt |
Understanding relationships between sequence, structure, and function within protein families using computational methods |
|
Current Position: Assistant Director and Head of Molecular Informaticas, Pfizer Discovery Technology Center; Adjunct Assistant Professor of Bioinformatics, Boston University |
* Jones, Beatrix
(Graduate)
09/16/97-06/15/99 |
U. of Washington |
Prof. Elizabeth Thompson |
Inference for Parametric Models of Dispersal |
|
Current Position: Assistant Professor, Statistics Department, Penn State University |
** Kanaar, Roland
(Postdoctoral)
1988-1989 |
University of California, Berkeley |
Prof. Nicholas R. Cozzarelli |
|
|
Current Position: Professor of Molecular Radiation Genetics, Department of Cell Biology & Genetics, Erasmus University, Rotterdam |
** Kang, Hunseung
(Postdoctoral)
1994-1996 |
University of California, Berkeley |
Prof. Ignacio Tinoco, Jr. |
Structure of RNA Pseudoknots in Ribosomal Frameshifting in Mouse Mammary Tumors |
|
Current Position: Principal Investigator at Kumho Life and Environmental Science Laboratory |
* Katritch, Vseolod
(Postdoctoral)
03/01/97-12/31/98 |
Rutgers University |
Prof. Wilma Olson |
Geometry and Physics of Knots, Conformational Properties and Force-extension Characteristics of Chromatin Fibers, Structural Modeling of Nucleic Acids-Drug Interactions |
|
* Keating, Amy
(Postdoctoral )
08/01/99-01/15/00 |
M.I.T. |
Prof. Bonnie Berger |
Ebent Driven Kinetic Simulation of Protein Assembly |
|
** Keller, Rebecca
(Postdoctoral)
01/01/99-12/31/99 |
University of California, Berkeley |
Prof. Carlos J. Bustamante |
|
|
** Khodursky, Arkady
(Graduate)
1990-1993/1993-1996 |
University of California, Berkeley |
Prof. Nicholas R. Cozzarelli |
|
|
Currently an Asst. Prof. of Biochemistry and Biophysics, University of Minnesota |
** Kosikov, Konstantine
(Graduate)
1995-1996 |
Rutgers University |
Prof. Wilma Olson |
Simulations of DNA Deformation |
|
Currently working for a software company, FileNET |
** Lee, Chris
(Graduate)
1991-1992 |
Stanford University |
Prof. Michael Levitt |
|
|
Leutenegger, Anne-Louise
12/16/00- |
University of Washington |
Prof. Elizabeth Thompson |
|
|
** Levene, Steve
(Postdoctoral)
1990-1991 |
University of California, Berkeley |
Prof. Nicholas R. Cozzarelli |
|
|
Current Position: Associate Professor, Dept. of Molecular and Cell Biology, University of Texas at Dallas |
Li Na, Michael
6/15/01-8/15/01 |
University of Washington |
Prof. Elizabeth Thompson |
Statistical Methods for Analyzing Linkage Disequilibrium and Recombination |
|
** Liang, Hong
(Graduate)
1990-1991 |
University of California, Berkeley |
Prof. Vaughan E.R. Jones |
|
|
* Liphardt, Jan
07/01/99-06/30/00
08/01/00-07/31/01 |
University of California, Berkeley |
Prof. Ignacio Tinoco |
Unfolding RNA by Force |
|
** Lucas, Adam
(Graduate)
1991-1993 |
Florida State University |
Prof. De Witt Sumners |
|
|
** Lund, Russell
(Postdoctoral) |
University of California, Los Angeles |
Prof. James H. White |
Applying Solid Mechanics to the Study of the Geometry and Topology of Closed Circular DNA |
|
Menke, Matt
(Graduate)
2001-5/31/02 |
M.I.T. |
Prof. Bonnie Berger
Prof. Lenore Cowen |
Predicting Specific Beta-Sheet Structures from Raw Protein Sequence Data |
|
** Mihanic, Ksenija
(Postdoctoral)
1994-1995 |
Rutgers University |
Prof. Wilma K. Olson |
|
|
** Nguyen, Trang
(Graduate)
09/01/90-08/31/91 |
University of California, Berkeley |
Prof. Terry Speed |
Statistical Models and Methods in Molecular Biology |
|
* Noble, Nathan J.
(Undergraduate)
07/98- |
Florida State University |
Prof. De Witt Sumners |
Protein Folding on a Simple Cubic Lattice: The CHCC Method |
|
Currently in two-year professional master’s program in computational biology offered by the math department at USC |
* Pachter, Lior
(Graduate)
08/01/97-07/31/99 |
M.I.T. |
Prof. Bonnie A. Berger |
Gene Recognition |
|
Current Position: Assistant Professor of Mathematics, University of California, Berkeley |
** Park, Britt
(Graduate)
1991-1993/1994-1996 |
Stanford University |
Prof. Michael Levitt |
Low Resolution ab initio Protein Structure Prediction |
|
Now writes software for web site development at Interwoven Inc. |
* Pulim, Vinay
(Graduate)
08/01/99-05/31/00 |
M.I.T. |
Prof. Bonnie A. Berger |
Scaffolding Structure of the Core of T4 Polyheads |
|
* Ramachandran, Gopal
(Graduate)
09/01/00-12/31/01 |
M.I.T. |
Prof. Bonnie Berger |
|
|
** Rice, Danny
(Graduate)
1993-1995 |
U.C.L.A. |
Prof. David S. Eisenberg |
Bioinformatics-based molecular evolution |
|
Currently a postdoctoral fellow studying intron evolution |
** Rida, Said
(Graduate)
1990-1991 |
Stanford University |
Prof. Vaughan E.R. Jones |
|
|
** Rybenkov, Valentine
(Postdoctoral) |
University of California, Berkeley |
Prof. Nicholas R. Cozzarelli |
Chromatin Structure and Dynamics; Mechanistic Enzymology of Chromatin Motors; Single Molecule Methods |
|
Current Position: Assistant Professor, Department of Chemistry and Biochemistry, University of Oklahoma |
* Samudrala, Ram
(Postdoctoral)
01/01/99-12/31/00 |
Stanford University |
Prof. Michael Levit |
Large Scale Protein Structure Prediction Using Comparative Modeling and ab initio Techniques
Current research (1/2003): Modelling Proteomes |
|
Current Position: Assistant Professor, University of Washington, Seattle |
** Sawin, Steve
(Graduate)
1990-1991 |
University of California, Berkeley |
Prof. Vaughan E.R. Jones |
|
|
Current Position: Associate Professor, Department of Mathematics and Computer Science, Fairfield University |
* Schwartz, Russell
(Graduate)
01/16/00-05/31/00 |
M.I.T. |
Prof. Bonnie A. Berger |
Modeling and Simulation of Protein Assembly Processes |
|
Currently working for Informatics Research group of Celera Genomics |
** Shaw, Stanley
(Graduate)
1990-1991 |
Harvard University |
Prof. James C. Wang |
|
|
** Shen, Ling X.
(Graduate)
1992-1994 |
University of California, Berkeley |
Prof. Ignacio Tinoco, Jr. |
Determining the Structure at Atomic Resolution of the First Biologically Functional Pseudoknot |
|
Current Position: Senior Scientist, Variagenics, Inc., pharmacogenetics company based in Cambridge, MA |
** Shi, Yaoming
(Graduate)
1993-1994 |
University of California, Berkeley |
Prof. Ignacio Tinoco, Jr. |
|
|
Currently works at KLA Tencor |
* Singh, Mona
(Graduate)
01/01/98-04/30/98 |
M.I.T. |
Prof. Bonnie Berger |
Sequence-based methods for coiled coil recognition, with applications to studying viral membrane fusion proteins |
|
Current Position: Assistant Professor, Computer Science Dept., Princeton University |
* Srebro, Nathan
(Graduate)
08/01/98-05/31/00 |
M.I.T. |
Prof. Bonnie Berger |
Mapping Disease Genes by Genetic Diversity |
|
** Tsai, Jerry
(Graduate)
1993-1994 |
Stanford University |
Prof. Michael Levitt |
Discrimination and Refinement in ab initio Structure Prediction |
|
Currently working with David Baker at the University of Washington |
* Tu, Benjamin
(Graduate)
06/01/97-08/31/97 |
Harvard University |
Prof. James C. Wang |
Determination of Contact Interfaces of Yeast Topoisomerase II Through Use of a Novel Protein Footprinting Technique |
|
** Vazquez, Mariel
(Graduate)
12/20/97-8/31/00 |
Florida State University |
Prof. De Witt Sumners |
Tangle Analysis of Gin Recombination |
|
** Vingron,
Martin
(Graduate)
1991-1993 |
U. of S. California |
Prof. Michael S. Waterman |
Sequence analysis, in particular sequence alignment and statistics |
|
Current Position: Director at the Max-Planck-Insitute for Molecular Genetics |
** Von Haeseler, Arndt
(Postdoctoral)
1990-1991 |
U. of S. California |
Prof. Michael S. Waterman |
Using alignement algorith to locate cryptogenes. Mathematical methods to reconstruct evolutionary trees |
|
Current Position: Professor for Theoretical Biology at the Max-Planck-Institute for Evolutionary Anthropology |
* Wu, Ming
(Postdoctoral)
03/01/98-09/30/98 |
University of California, Berkeley |
Prof. Ignacio Tinoco, Jr. |
RNA Folding |
|
Director of research at a biotech startup called DiscoverX |
* Wu, Thomas
(Graduate)
06/01/97-08/31/97 |
Harvard University |
Prof. James C. Wang |
Expression, Purification, and Crystallization of the N-terminus Half of Yeast Topoisomearse II |
|
* Yeh, Ru-Fang
(Graduate)
03/01/97-06/01/98 |
University of California, Berkeley |
Prof. Terry Speed |
(i) On Constructing STS-Clone Physical Maps |
|
Currently a Postdoc at the lab of Chris Burge at the department of biology at M.I.T. |
** Yi, Tau-Mu
(Graduate)
1990-1992 |
M.I.T. |
Prof. Eric S. Lander |
Computational Molecular Biology |
|
Currently a Postdoctoral Fellow in Mel Simon’s lab, Division of Biology, Caltech |
** Yooseph, Shibu
(Graduate)
09/01/95-08/31/97 |
University of
Southern California |
Prof. Michael S. Waterman |
Studying the Notion of Information Extraction from a Set of Evolutionary Trees on a Given Species Set |
|
Current Position: Computer Scientist, Celera Genomics |
* Zheng, Minxue
(Postdoctoral)
10/01/98-02/28/99 |
University of California, Berkeley |
Prof. Ignacio Tinoco, Jr. |
NMR Studies of RNA Folding and Metal Bindings of the Group I intron P5abc Subdomain |
|
Current Position: Staff Scientist, Nucleic Acid Diagnostics Division, Bayer Inc. |
* Fellows supported by Burroughs Wellcome Fund
** Fellows supported by National Science Foundation |
