Publication list used in Computational Methods in Biology (Fall 2022)

• Topological generalizations of network motifs
  motif_generalization.pdf
  (Julie, Cagatay, Tristen, Nov. 30)


• Ultrasensitivity and noise propagation in a synthetic transcriptional cascade
  ultrasensitivity.pdf
  


• Sniffers, buzzers, toggles, and blinkers: dynamics of regulatory and signaling pathways in the cell
  sniffers_buzzers.pdf
  (Chris, Ece, James, Nov. 28)


• Emergent properties of networks of biological signaling pathways
  signaling_pathways.pdf
  


• Channel noise in neurns
  channel_noise.pdf
  


• Emergence of organized bursting in clusters of pancreatic beta-cells by channel sharing
  channel_sharing.pdf
  


• A reduced model clarifies the role of feedback loops and time delays in the Drosophila circadian oscillator
  circadian_oscillator.pdf
  


• Subthreshold dynamics in periodically stimulated squid giant axons
  subthreshold_dynamics.pdf
  


• Bursts as a unit of neural information: selective communication via resonance
  bursts_as_information.pdf
  (David, I-Ting, Maya, Dec. 2)


• A mathematical model of the pathogenesis, prevention, and reversal of type 2 diabetes
  diabetes.pdf
  


• The dynamic clamp comes of age
  dynamic_clamp.pdf
  


• Neural network of C elegans
  C_elegans_brain.pdf
  


• Local neural circuits
  local_circuits.pdf
  


• NFKB signaling system
  NFKB.pdf
  


• Prions and bistability
  prions_bistability.pdf