Introduction to Computational Neuroscience Software

Some software templates for use with MAP5932.

• A code for plotting a function in Matlab:
  plotting.m


• A code for solving and ODE in Matlab:
  ODEs with Matlab


• The Goldbeter-Lefever model: Goldbeter-Lefever model


• A Matlab code for reading a data file and plotting:
  plotting from file


• As above, but making a plot with two panels:
  plotting, two panels


• Hodgkin-Huxley with an A-type current:
  HH with A-type


• Hodgkin-Huxley with a persistent Na current:
  HH with Nap current


• The Pinsky-Rinzel model:
  Pinsky-Rinzel


• The Hodgkin-Huxley model:
  Hodgkin-Huxley


• Model for an auditory neuron:
  SON


• Model for an HVC-X neuron:
  HVCX


• Model for an HVC-RA neuron:
  HVCRA


• Model for a bursting neuron:
  bursting


• Model for a neuron with genetic knockout:
  knockout