Software for neurons
The computer programs below are listed according to the articles in which they appear. They run with the XPPAUT computer software. XPPAUT is free, and runs on Unix, Linux, and Windows machines. It can be downloaded from the website of Bard Ermentrout .
  1. Bai, Bertram, and Karamched
    "A Closed-Loop Multi-Scale Model for Intrinsic Frequency-Dependent Regulation of Axonal Growth", Mathematical Biosciences, 344:108768, 2022. MBS_22

  2. Gasior, Korshunov, Trombley, and Bertram
    "Fast-Slow Analysis as a Technique for Understanding the Neuronal Response to Current Ramps", Journal of Computational Neuroscience, DOI: 10.1007/s10827-021-00799-0, 2021. JCNS_21

  3. Carroll, Bertram, and Hyson
    "Intrinsic Physiology of Inhibitory Neurons Changes Over Auditory Development", Journal of Neurophysiology, vol. 119, pp. 290-304, 2018. JNP_18

  4. Blanco, Bertram, and Tabak
    "The Effects of GABAergic Polarity Changes on Episodic Neural Network Activity in Developing Neural Systems", Frontiers in Computational Neuroscience, 11(88), doi: 10.3389/fncom.2017.00088, 2017. This is the mean field model used to make Figures 1 and 2. For the network model code please contact Wilfredo Blanco. FCN_17.cpp

  5. Sengul, Clewley, Bertram, and Tabak
    "Determining the Contributions of Divisive and Subtractive Feedback in the Hodgkin-Huxley Model", Journal of Computational Neuroscience, vol. 37, pp. 403-415, 2014. JCNS_14

  6. Tabak, Rinzel, and Bertram
    "Quantifying the Relative Contributions of Divisive and Subtractive Feedback to Rhythm Generation", PLoS Computational Biology, vol. 7(4), e1001124. doi:10.1371/journal.pcbi.1001124, 2011. PLoS_11.ode

  7. Tabak, Mascagni, and Bertram
    "Mechanism for the Universal Pattern of Activity in Developing Neuronal Networks", Journal of Neurophysiology, vol. 103, pp. 2208-2221, 2010. JNP_10

  8. Tomaiuolo, Tabak, and Bertram
    "Correlation Analysis: A Tool for Comparing Relaxation-Type Models to Experimental Data", In Michael L. Johnson and Ludwig Brand, editors: Methods in Enzymology, vol. 467, Burlington: Academic Press, 2009, pp. 1-22. correlator_09

  9. Bertram, Rhoads, and Cimbora
    "A Phantom Bursting Mechanism for Episodic Bursting", Bulletin of Mathematical Biology, vol. 70, pp. 1979-1993, 2008. BMB_08b

  10. Li, Bertram, and Rinzel
    "Modeling N-Methyl-D-Aspartate-Induced Bursting in Dopamine Neurons", Neuroscience, vol. 71, pp. 397-410, 1996. Neurosci_96.ode