Version 0.1

• Author

  Wen Huang

• Collaborators

  James Wilgenbusch, K. A. Gallivan

• Abstract

       Version 0.1 of;TreeScaper is a cross-platform software package to project trees into Euclidean space based on Tree-to-Tree distances. It is written by C++ and using package Qt, Clapack and VTK. The detals are in here.
  • Command line version
  • Windows GUI binary version
  • Linux GUI binary version
  • Mac GUI binary version
  • GUI code

New version in development

• Authors

  Wen Huang, Guifang Zhou, Melissa Marchand

• Collaborators

  James Wilgenbusch, K. A. Gallivan, Jemery Brown, Jemery Ash, David Morris

• Abstract

       New version of;TreeScaper create and analyze two types of networks based on tree sets. The first type uses topologies as vertices and topological (dis)similarity as edges. The second uses bipartitions as vertices and the degree of covariance in the bipartition presence/absence as edges. Several community detection algorithms are implemented to automate the detection of natural groups of related trees or bipartitions.
  • TreeScaper 1.0 in GitHub
  • TreeScaper 2.0 in GitHub