TreeScaper
Version 0.1
Author
Wen Huang
Collaborators
James Wilgenbusch, K. A. Gallivan
Abstract
  Version 0.1 of;TreeScaper is a cross-platform software package to project trees into Euclidean space based on Tree-to-Tree distances. It is written by C++ and using package Qt, Clapack and VTK.
The detals are in here.
New version in development
Authors
Wen Huang, Guifang Zhou, Melissa Marchand
Collaborators
James Wilgenbusch, K. A. Gallivan, Jemery Brown, Jemery Ash, David Morris
Abstract
  New version of;TreeScaper create and analyze two types of networks based on tree sets. The first type uses topologies as vertices and topological (dis)similarity as edges. The second uses bipartitions as vertices and the degree of covariance in the bipartition presence/absence as edges. Several community detection algorithms are implemented to automate the detection of natural groups of related trees or bipartitions.