Some publications with students in the past five years Details

(For more complete listing, see the Affiliated Faculty web pages and the Department's e-print archive.)
Authors | Title | Journal | Year |
---|---|---|---|

V. Yildirim and R. Bertram |
Calcium Oscillation Frequency-Sensitive Gene Regulation and Homeostatic Compensation in Pancreatic β-Cells | Bulletin of Mathematical Biology, 79:1295-1324 | 2017 |

L. Mander, S. C. Dekker, M. Li, S. W. Punyasena, T. M. Lenton |
A Morphometric Analysis of Vegetation Patterns in Dryland Ecosystems | Royal Society Open Science, 4:160443 | 2017 |

S. Fabbri, J. Li, R. P. Howlin, A. Rmaile, B. Gottenbos, M. De Jager, E. M. Starke, M. Aspiras, M. T. Ward, N. G. Cogan, P. Stoodley |
Fluid-Driven Interfacial Instabilities and Turbulence in Bacterial Biofilms | Environmental Microbiology, 19:4417-4431 | 2017 |

J. B. Cole, M. Manyama, J. R. Larson, D. K. Liberton, T. M. Ferrara, S. L. Riccardi, M. Li, W. Mio, O. D. Klein, S. A. Santorico, B. Hallgrimsson, R. A. Spritz |
Human Facial Shape and Size Heritability and Genetic Correlations | Genetics, 205:967-978 | 2017 |

A.-M. Croicu, A. M. Jarrett, N. G. Cogan, M. Y. Hussaini |
Short-Term Antiretroviral Treatment Recommendations Based on Sensitivity Analysis of a Mathematical Model for HIV Infection of CD4+ T Cells | Bulletin of Mathematical Biology, 79:2649-2671 | 2017 |

D. Weingard, W. Blanco, O. Steinbock, R. Bertram |
Stabilization of Collapsing Scroll Waves in Systems with Random Heterogeneities | Chaos, 27:043108 | 2017 |

A. M. Jarrett, N. G. Cogan, M. Y. Hussaini |
Combining Two Methods of Global Sensitivity Analysis to Investigate MRSA Nasal Carriage Model | Bulletin of Mathematical Biology, 79:2258-2272 | 2017 |

D. Galvis, W. Wu, R. L. Hyson, F. Johnson, R. Bertram |
A Distributed Neural Network Model for the Distinct Roles of Medial and Lateral HVC in Zebra Finch Song Production | Journal of Neurophysiology, 118:677-692 | 2017 |

M. Li, J. B. Cole, M. Manyama, J. Larson, J. J. Bannister, D. K. Liberton, S. L. Ricardi, T. M. Ferrara, S. A. Santorico, N. D. Korkert, R. A. Spritz, W. Mio, B. Hallgrimsson |
Rapid Automated Landmarking for Morphometric Analysis of Three Dimensional Facial Scans | Journal of Anatomy, 230:607-618 | 2017 |

V. Yildirim, S. Vadrevu, B. Thompson, L. S. Satin, R. Bertram |
Upregulation of an Inward Rectifying Potassium Channel Can Rescue Slow Calcium Oscillations in K(ATP) Channel Deficient Pancreatic Islets | PLoS Computational Biology, 13(7):e1005686 | 2017 |

J. M. Wyse, I. C. W. Hardy, L. Yon, M. Mesterton-Gibbons |
The Impact of Competition on Elephant Musth Strategies: A Game-Theoretic Model | Journal of Theoretical Biology, 417:109-130 | 2017 |

M. Ross, D. Flores, R. Bertram, F. Johnson, R. L. Hyson |
Neuronal Intrinsic Physiology Changes During Development of a Learned Behavior | eNeuro, 4(5):e0297-17.2017 | 2017 |

S. Wesolowski, D. Vera, W. Wu |
SRSF Shape Analysis for Sequencing Data Reveal New Differentiating Patterns | Computational Biology and Chemistry, 70:56-64 | 2017 |

A. Bucksch, ..., D. H. Diaz Martinez, ...,M. Li, ...,
W. Mio, ... |
Morphological Plant Modeling: Unleashing Geometric and Topological Potential Within the Plant Sciences | Frontiers in Plant Science, 8:00, doi:10.3389/fpls.2017.00900 | 2017 |

M. Mesterton-Gibbons, Y. Dai, M. Goubault, I.C.W. Hardy |
Volatile Chemical Emission as a Weapon of Rearguard Action: A Game-Theoretic Model of Contest Behavior | Bulletin of Mathematical Biology, 79:2413-2449 | 2017 |

D. Weingard, O. Steinbock, R. Bertram |
Expansion of Scroll Wave Filaments Induced by Chiral Mismatch | Chaos, 28(4):045106 | 2018 |

N. G. Cogan, J. Li, S. Fabbri, P. Stoodley |
Computational Investigation of Ripple Dynamics in Biofilms in Flowing Systems | Biophysical Journal, 115:1383-1400 | 2018 |

A. Dobreva, R. Paus, N. G. Cogan |
Analysing the Dynamics of a Model for Alopecia Areata as an Autoimmune Disorder of Hair Follicle Cycling | Mathematical Medicine and Biology, 35:387-407 | 2018 |

J. P. McKenna and R. Bertram |
Fast-Slow Analysis of the Integrated Oscillator Model for Pancreatic β-Cells | Journal of Theoretical Biology, 457:152-162 | 2018 |

M. Li, M. H. Frank, V. Comeva, W. Mio, D. Chitwood, C. Topp |
The Persistent Homology Mathematical Framework Provides Enhanced Genotype-to-Phenotype Associations for Plant Morphology | Plant Physiology, 177:1382-1395 | 2018 |

D. H. Diaz Martinez, F. Memoli, W. Mio |
The Shape of Data and Probability Measures | Applied and Computational Harmonic Analysis, https://doi.org/10.1016/j.acha.2018.03.003 | 2018 |

D. Galvis, W. Wu, R. L. Hyson, F. Johnson, R. Bertram |
Interhemispheric Dominance Switching in a Neural Network Model for Birdsong | Journal of Neurophysiology, 120:1186-1197 | 2018 |

M. I. Poole, I. Sorribes, H. V. Jain |
Modeling Hepatitis C Virus Protein and p53 Interactions in Hepatocytes: Implications for Carcinogenesis | Mathematical Biosciences, 306:186-196 | 2018 |

S. Cellat, Y. Fan, W. Mio, G. Okten |
Learning Shape Metrics with Monte Carlo Optimization | Journal of Computational and Applied Mathematics, 348:120-129 | 2019 |

D. H. Diaz Martinez, C. H. Lee, P. T. Kim, W. Mio |
Probing the Geometry of Data with Diffusion Frechet Functions | Applied and Computational Harmonic Analysis, 47:935-947 | 2019 |

A. M. Jarrett and N. G. Cogan |
The Ups and Downs of S. Aureus Nasal Carriage | Mathematical Medicine and Biology, 36:157-177 | 2019 |

M. T. Ross, D. Flores, R. Bertram, F. Johnson, W. Wu, R. L. Hyson |
Experience-Dependent Intrinsic Plasticity During Auditory Learning | Journal of Neuroscience, 39:1206-1221 | 2019 |

J. E. Adablah, R. Vinson, M. G. Roper, R. Bertram |
Synchronization of Pancreatic Islets by Periodic and Non-Periodic Muscarinic Agonist Pulse Trains | PLoS ONE, 14(2):e0211832 | 2019 |

N. Acar and N. G. Cogan |
Enhanced Disinfection of Bacterial Populations by Nutrient and Antibiotic Challenge Timing | Mathematical Biosciences, 313:12-32 | 2019 |

I. C. Sorribes, M. N. J. Moore, H. M. Byrne, H. V. Jain |
A Biomechanical Model of Tumor-Induced Intracranial Pressure and Edema in Brain Tissue | Biophysical Journal, 116:1560-1574 | 2019 |

M. Aggarwal, N. Cogan, R. Bertram |
Where to Look and How to Look: Combining Global Sensitivity Analysis with Fast/Slow Analysis to Study Multi-timescale Oscillations | Mathematical Biosciences, 314:1-12 | 2019 |

M. Sena-Velez, S. D. Holland, M. Aggarwal, N. G. Cogan, M. Jain, D. W. Gabriel, K. M. Jones |
Growth Dynamics and Survival of Liberibacter crescens BT-1, an Important Model Organism for the Citrus Huanglongbing Pathogen | Applied and Environmental Microbiology, DOI:10.1128/AEM.01656-19 | 2019 |

R. Bertram, R. L. Hyson, A. J. Brunick, D. Flores, F. Johnson |
Network Dynamics Underlie Learning and Performance of Birdsong | Current Opinion in Neurobiology, 64:119-126 | 2020 |

A. Dobreva, R. Paus, N. G. Cogan |
Toward Predicting the Spatio-Temporal Dynamics of Alopecia Areata Lesions Using Partial Differential Equation Analysis | Bulletin of Mathematical Biology, 82:1-32 | 2020 |

M. Fazli, T. Vo, R. Bertram |
Phantom Bursting May Underlie Electrical Bursting in Single Pancreatic β-Cells | Journal of Theoretical Biology, 501:110346 | 2020 |

J. Kimrey, T. Vo, R. Bertram |
Big Ducks in the Heart: Canard Analysis Can Explain Large Early Afterdepolarizations in Cardiomyocytes | SIAM Journal on Applied Dynamical Systems, 19:1701-1735 | 2020 |

J. Kimrey, T. Vo, R. Bertram |
Canard Analysis Reveals a Large Ca^{2+} Window Current Promotes Early Afterdepolarizations in Cardiac Myocytes |
PLoS Computational Biology, 16:e1008341 | 2020 |

M. Fazli, T. Vo, R. Bertram |
Fast-Slow Analysis of a Stochastic Mechanism for Electrical Bursting | Chaos, 31:103128 | 2021 |

F. Bai, R. Bertram, B. R. Karamched |
A Closed-Loop Multi-Scale Model for Intrinsic Frequency-Dependent Regulation of Axonal Growth | Mathematical Biosciences, 344:108768 | 2022 |